The Primary Information of Cyclic Nucleotide-regulated Channels (CNG)
1. Summary
Cyclic nucleotide-gated (CNG) channels are ion channels which are activated by the binding of cGMP or cAMP [1]. Cyclic nucleotide gated channel contains two kind subunits, alpha-subunit (alpha 1, alpha 2, alpha 3, alpha 4) and beta-subunit (beta 1, beta 3).
A CNG channel consists of four subunits around a central pore. Each protein subunit consists 6 transmembrane segments (S1-S6), a P-loop, intracellular amino terminal region, and carboxy terminal region. The P-loop and S6 segments around the pore, which plays a role in ion conduction. There is a cyclic nucleotide binding domain (CNBD) and connection region to the S6 segment in the carboxy terminal. There is a post-CNDB region in the amino terminal [2].
2. Binding Sites
The channel contains three CNGA3 and one CNGB3 subunits. Arg403 (yellow sphere) in the pore helix of CNGB3 projects into an asymmetric selectivity filter and forms hydrogen bonds with two pore-lining backbone carbonyl oxygens. Arg442 in S6 of CNGB3 protrudes into and occludes the pore below the hydrophobic cavity gate previously observed in homotetrameric CNGA channels. It is interesting that Arg403Gln is a disease mutation, and Arg442 is replaced by glutamine in some animal species with dichromatic or monochromatic vision [3].
3. Target List
| ICDB_Pro ID | Protein Name | Organism | Uniport Accession Number | Gene Name |
|---|---|---|---|---|
| ICDB_Pro_1636 | Probable cyclic nucleotide-gated ion channel 16 | Arabidopsis thaliana (Mouse-ear cress) | Q9SU64 | CNGC16 At3g48010 T17F15.120 |
| ICDB_Pro_1633 | Probable cyclic nucleotide-gated ion channel 3 | Arabidopsis thaliana (Mouse-ear cress) | Q9SKD7 | CNGC3 At2g46430 F11C10.12 |
| ICDB_Pro_1552 | Putative cyclic nucleotide-gated ion channel 13 | Arabidopsis thaliana (Mouse-ear cress) | Q9LD40 | CNGC13 At4g01010 F3I3.1 |
| ICDB_Pro_1634 | Putative cyclic nucleotide-gated ion channel 15 | Arabidopsis thaliana (Mouse-ear cress) | Q9SL29 | CNGC15 At2g28260 T3B23.7 |
| ICDB_Pro_1625 | Putative cyclic nucleotide-gated ion channel 7 | Arabidopsis thaliana (Mouse-ear cress) | Q9S9N5 | CNGC7 At1g15990 T24D18.9 |
| ICDB_Pro_1497 | Putative cyclic nucleotide-gated ion channel 8 | Arabidopsis thaliana (Mouse-ear cress) | Q9FXH6 | CNGC8 At1g19780 F14P1.12 F6F9.17 |
| ICDB_Pro_1560 | Putative cyclic nucleotide-gated ion channel 9 | Arabidopsis thaliana (Mouse-ear cress) | Q9M0A4 | CNGC9 At4g30560 F17I23.100 |